KITP Program: Biological Switches and Clocks (July 2 - August 10, 2007)
Coordinators: Réka Albert, Albert Goldbeter, Peter Ruoff, Jill Sible, John Tyson

Time Speaker Title
7/03, 9:00 a.m. Biological Switches and Clocks Brief Introductions of Participants
7/03, 11:00 a.m. John Tyson
Virginia Polytechnic & KITP
Biological Switches[Podcast][Aud][Cam]
7/05, 9:00 a.m. Albert Goldbeter
Univ. Bruxelles & KITP
Biological Clocks[Podcast][Aud][Cam]
7/05, 11:00 a.m. Réka Albert
Penn State & KITP
Network Analysis[Slides][Podcast][Aud][Cam]
7/06, 9:00 a.m. Peter Ruoff
University of Stavanger & KITP
Chemical Oscillations and Circadian Rhythms[Slides][Podcast][Vid][Aud][Cam]
7/06, 11:00 a.m. Frank Doyle
Robustness & Sensitivity of Biological Switches & Clocks[Podcast][Aud][Cam]
7/09, 9:00 a.m. Jeremy Gunawardena
Harvard Med. School & KITP
Multisite Phosphorylation[Podcast][Aud][Cam]
7/09, 11:00 a.m. Madalena Chaves
Robust Analysis of Boolean Networks[Podcast][Aud][Cam]
7/10, 9:00 a.m. Moy Santillán
Cinvestav-IPN & KITP
Bistability in the Lactose Operon[Slides][Podcast][Aud][Cam]
7/10, 11:00 a.m. Hiroki Ueda
The Underlying Mechanism for Singularity Behavior of Circadian Clock[Podcast][Aud][Cam]
7/11, 12:00 p.m. Claude Gerard
Univ. Bruxelles & KITP
Modeling the Cell Cycle
7/11, 12:00 p.m. Tongli Zhang
Virginia Tech & KITP
Modeling Apoptosis
7/12, 9:00 a.m. Stuart Brody
High Frequency 'Circadian' Oscillations / Amplitude Effects[Podcast][Aud][Cam]
7/12, 11:00 a.m. David Rand
Univ of Warwick & KITP
Mapping Sensitivity & Using It to Design Experiments[Podcast][Aud][Cam]
7/13, 9:00 a.m. Deborah Bell-Pedersen
Texas A&M & KITP
Complexity in the Neurospora Circadian Clock[Slides][Podcast][Aud][Cam]
7/13, 11:00 a.m. Daniel Forger
Univ. of Michigan & KITP
'Simple' and 'Complex' Models of Circadian Rhythms[Podcast][Aud][Cam]
7/16, 9:00 a.m. Michel Jacquet
Univ. Paris & KITP
Stress-induced Oscillatory Nucleocytoplasmic Behavior of the Transcription Factor Msn2 in Yeast[Slides][Podcast][Vid][Aud][Cam]
7/16, 11:00 a.m. Gilles Charvin
Rockefeller Univ.
Controlling the Budding Yeast Cell Cycle[Podcast][Aud][Cam]
7/17, 9:00 a.m. Richard Gomer
Rice & KITP
Symmetry-breaking, Using Some Math to Study Development, and Connecting Simple Development to a Medical Problem[Slides][Podcast][Aud][Cam]
7/17, 11:00 a.m. Jay Dunlap
Dartmouth Med. School
The Neurospora Circadian System -- Some New Tools and New Insights[Slides][Podcast][Aud][Cam]
7/18, 12:00 p.m. Biological Switches and Clocks ---Brown Bag Lunch Improving Communication Among Experimentalists and Theoreticians
7/19, 9:00 a.m. Didier Gonze
Univ. Bruxelles & KITP
Stochastic models for Circadian Rhythms[Slides][Podcast][Aud][Cam]
7/19, 11:00 a.m. Dave McMillen
Univ. of Toronto & KITP
Noise in Bacterial Gene Expression: Experiments and Models.[Slides][Podcast][Aud][Cam]
7/20, 9:00 a.m. Stacey Harmer
Connecting the Plant Clock to its Outputs[Podcast][Aud][Cam]
7/20, 11:00 a.m. Andrew Millar
Univ. of Edinburgh
A New Season's Model for the Plant Clock[Podcast][Aud][Cam]
7/23, 9:00 a.m. Eva Farre
Approaches to Study the Plant Circadian Network[Podcast][Aud][Cam]
3/26, 12:15 p.m. Peter Ruoff
(University of Stavanger)
John Tyson
(Virginia Polytechnic)
How Do Cells Compute?[Podcast][Aud][Cam]
KITP Blackboard Lunch
7/24, 9:00 a.m. Jill Sible
VA Polytechnic Inst & KITP
Modeling from an Experimentalist's Perspective: How to mine the literature and design experiments to provide data that informs mathematical models of signaling networks[Slides][Podcast][Aud][Cam]
7/24, 11:00 a.m. Erik Herzog
WA Univ in St. Louis
Period Determination in the Mammalian Circadian System[Podcast][Aud][Cam]
7/25, 12:00 p.m. Biological Switches and Clocks ---Brown Bag Lunch Educating a New Generation of Quantitative Biologists (led by Raquell Holmes & Jill Sible)
7/26, 9:00 a.m. Joe Pomerening
Indiana Univ. & KITP
Clocks and Dominoes: Studies into Positive Feedback and the Continuum from Early Embryo to Somatic Cell[Slides][Podcast][Aud][Cam]
7/26, 11:00 a.m. Attila Csikász-Nagy
Univ.Trento & KITP
Regulation of DNA Synthesis, Cell Division and Cell Growth Zones in Fission Yeast[Slides][Podcast][Aud][Cam]
7/27, 9:00 a.m. Andrea Ciliberto
A Model of the Spindle Assembly Checkpoint Based on Autocatalysis[Podcast][Aud][Cam]
7/27, 11:00 a.m. John Tyson
(Virginia Polytechnic & KITP)
Kathy Chen
(Virginia Tech & KITP)
Cell Cycle Regulation in Yeast[Podcast][Aud][Cam]
7/30, 9:00 a.m. Boris Shraiman
Modeling Signal Transduction: How quantitative can one get?[Podcast][Aud][Cam]
7/30, 11:00 a.m. Yigal Meir
Ben Gurion Univ. & KITP
Chemotaxis in E-Coli[Slides][Podcast][Aud][Cam]
7/31, 9:00 a.m. Denise Wolf
Of Microbes and Memory[Podcast][Aud][Cam]
7/31, 11:00 a.m. Alexander Van Oudenaarden
The Frequency Dependence and Perfect Adaptation of Osmosensing in Saccharomyces Cerevisiae[Podcast][Aud][Cam]
8/01, 9:00 a.m. Biological Switches and Clocks ---Brown Bag Lunch Cell Signalling
8/02, 9:00 a.m. Tim Elston
Signal Specificity in Practice and Theory[Podcast][Aud][Cam]
8/02, 11:00 a.m. Leor Weinberger
Princeton & KITP
Design Principles from HIV's Latency Circuit: Noisy positive feedback, monostability, and a simple 'timing' fuse[Podcast][Aud][Cam]
8/03, 9:00 a.m. Mart Loog
Univ. Tartu & KITP
Dynamic Changes of Cdk1 Signals in Budding Yeast Cell Cycle[Slides][Podcast][Aud][Cam]
8/03, 11:00 a.m. David Lubensky
Univ. of Michigan & KITP
Synchronized Cycles, Allosteric Transitions, and the Cyanobacterial Circadian Oscillator[Slides][Podcast][Aud][Cam]
8/06, 9:00 a.m. Stefan Bornholdt
Univ. of Bremen & KITP
Discrete Dynamical Networks as Toy Models for Computation in the Cell[Slides][Podcast][Aud][Cam]
8/06, 11:00 a.m. Jin Wang
SUNY Stony Brook & KITP
Energy Landscape Theory of Cellular Networks[Podcast][Aud][Cam]
8/07, 9:00 a.m. Adrian Granada
Humboldt, Berlin & KITP
Half-baked Theoretical Approach to Synchronization within the SCN[Podcast][Aud][Cam]
8/07, 9:45 a.m. Peter Ruoff
Univ. of Stavanger & KITP
Perfect Adaptation with Zero Control Coefficients[Slides][Podcast][Aud][Cam]
8/07, 11:00 a.m. Daniel Forger
Univ. of Michigan & KITP
Celebrating the Novick and Weiner's 50th Anniversary with a Super Bistable Switch[Podcast][Aud][Cam]
8/08, 12:00 p.m. Biological Switches and Clocks ---Brown Bag Lunch Wrap Up: Feedback, Special Issue of Interface, Teaching Modules

last modified 08/07/07 dme