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KITP Program: Bio-Molecular Networks (Jan 6 - Mar 28, 2003)
Coordinators: D.Fygenson, A.Ruckenstein, B.Shraiman, L.Wolpert

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Speakers: Please lend your transparencies to the KITP staff members in the front office (Rm 1102) for scanning, or see us about file upload.

Time Speaker Title

 Dynamics, Adaptation and Fluctuations in Bio-networks
3/27, 11:00 a.m. P. Swain, L. Wolpert, V. Hakim, B. Shraiman Informal Talks on Adaptation, Cross-talk and Noise in Bio-Networks[Aud][Cam]
3/27, 2:00 p.m. Dr. Rama Ranganathan
South West Medical Center
Signal Processing in Drosophila Photoreceptor, contd[Aud][Cam]
3/27, 9:30 a.m. Dr. Rama Ranganathan
South West Medical Center
Signal Processing in Drosophila Photoreceptor[Aud][Cam]
3/26, 11:00 a.m. Dr. Peter Swain
McGill
Stochastic Gene Expression in Single Cells[Aud][Cam]
3/26, 9:30 a.m. Dr. Fred Cross
Rockefeller
Cell Cycle[Slides][Aud][Cam]
3/25, 11:30 a.m. Dr. Jose Vilar
Rockefeller
Modeling Noise, Switches and Clocks[Aud][Cam]
3/25, 10:30 a.m. Mr. Christian Hong
Virginia Tech
Modeling Molecular Mechanisms Underlying Circadian Rhythms in D. Melanogoster[Slides][Aud][Cam]
3/25, 9:00 a.m. Dr. Michael Young
Rockefeller
Molecular Networks Composing Animal Clocks[Slides][Aud][Cam]
3/24, 2:00 p.m. Dr. Peter Ruoff
Stavanger
A Theory for Temperature-Compensation and Period Homoestasis in Reaction Kinetic Models of Biological Oscillators[Slides][Vid][Aud][Cam]
3/24, 9:30 a.m. Dr. Jay Dunlap
Dartmouth
How Does a Circadian Clock Work?[Slides][Aud][Cam]

3/20-21, 9-5 Workshop Robustness Analysis Tools with Applications

3/18, 10:00 a.m. Dr. Andy Yates
KITP & University College London
Cytokine Signaling in T-Cells: A Model for Cellular Decision-Making[Slides][Aud]
3/17, 10:00 a.m. Dr. Mukund Thattai
KITP & MIT
Metabolic Switching and Stochasticity in E. coli[Slides][Aud]

 Eukaryotic Chemotaxis
3/14, 11:30 a.m. Dr. Herbert Levine
UCSD
Conference Summary: How Close are we to Understanding Chemotactic Response?[Aud][Cam]
3/14, 11:15 a.m. Dr. Alex Groisman
UCSD
Microfluidics for Cell Biology and Chemotaxis[Aud][Cam]
3/14, 10:15 a.m. Dr. Eberhard Bodenschatz
Cornell
Towards A New Generation of Chemotaxis Experiments[Slides][Aud][Cam]
3/14, 9:00 a.m. Dr. Chris Janetopoulos
Hopkins
Quantitative Analysis of Cellular Chemotactic Responses
3/13, 4:15 p.m. Dr. Wouter-Jan Rappel
UCSD
A Temporal Approach to Modeling Chemotactic Signaling[Slides][Vid][Aud][Cam]
3/13, 3:30 p.m. Dr. Atul Narang
University Florida
Modeling Phospholipid Signaling Dynamics[Slides][Vid][Aud][Cam]
3/13, 2:00 p.m. Dr. Richard Firtel
UCSD
Dicty Chemotaxi Visualized by Subcellular Fluorescent Microscopy[Aud][Cam]
3/13, 11:00 a.m. Dr. Henry Bourne
UCSF
A Neutrophil's Sense of Direction[Aud][Cam]
3/13, 9:30 a.m. Dr. Dan Wu
University Connecticut
Molecular Basis of Chemotactic Signal Transduction[Aud][Cam]
3/12, 4:30 p.m. Dr. Pablo Iglesias
Hopkins
Adaptation and Response in Dicty Chemotaxis[Aud][Cam]
3/12, 3:30 p.m. Dr. Tobias Meyer
Stanford
Eukariotic Signal Transduction Networks[Aud][Cam]
3/12, 11:30 a.m. Dr. ChinLin Guo
Harvard
Yeast Chemotropism: Experiments and Models[Aud][Cam]
3/12, 10:00 a.m. Dr. William Loomis
UCSD
The Dicteostelium Motility Cycle[Slides][Vid][Aud][Cam]

3/06, 10:00 a.m. Dr. Sean Collins
UCSF
Understanding the Propagation of a Yeast Prion[Slides][Aud]
3/05, 10:00 a.m. Dr. Greg Lemke
Salk Institute
Topographic Wiring of the Eye to the Brain[Slides][Aud]
3/04, 10:00 a.m. Dr. Peter Detwiler
U. Washington
Phototransduction: A Review[Aud]

 Bio-informatic Approach to Genetic Networks
2/28, 10:30 a.m. Dr. Harmen Bussemaker
Columbia
Using Regression Analysis to Infer Regulatory Circuitry from Genome-Wide Gene Expression and Binding Data[Slides][Aud][Cam]
2/28, 9:00 a.m. Dr. Terence Hwa
UCSD
The Style of Genetic Computing[Slides][Aud][Cam]
2/27, 10:30 a.m. Dr. Hao Li
UCSF
Reconstructing the Transcription Networks of a Cell Using Computational Genomics[Slides][Aud][Cam]
2/27, 9:00 a.m. Dr. Michael Zhang
CSHL
Computational Molecular Biology of Genome Expression and Regulation[Slides][Aud][Cam]
2/26, 11:30 a.m. Dr. David Haynor
U. Washington
Computational Modeling of the Yeast Transcriptional Network[Slides][Aud][Cam]
2/26, 10:30 a.m. Dr. Bing Ren
UCSD
Dissecting the Myc Regulation Network Using Promoter Microarrays[Slides][Aud][Cam]
2/26, 9:00 a.m. Dr. Gary Stormo
WU
Prospects for a Useful Protein-DNA Recognition Code[Slides][Aud][Cam]
2/25, 11:30 a.m. Dr. Anirvan Sengupta
Rutgers
Biophysical Approach to Transcription Factor Binding Site Discovery[Slides][Aud][Cam]
2/25, 10:30 a.m. Dr. Saeed Tavazoie
Princeton
From DNA Sequence to Gene Expression[Aud][Cam]
2/25, 9:00 a.m. Dr. Eugene Koonin
NIH
Birth and Death of Domains: Simple Models of Genome Evolution Explain Power Law Distribution of Protein Family Size[Slides][Aud][Cam]
2/24, 10:00 a.m. Dr. Eric Siggia
Rockefeller
Analysis of Regulatory Sequence in Bacteria, Yeast and Fly[Aud][Cam]

2/20, 10:00 a.m. Dr. Hao Li
KITP & UCSF
Introduction to Bioinformatics[Slides][Aud][Cam]

 Genetic Networks in Development
2/14, 2:00 p.m. Discussion: Whence from here? (all)
2/14, 11:30 a.m. Dr. Naama Barkai
Weizmann
Robustness in Morphogen Gradients[Aud][Cam]
2/14, 10:30 a.m. Dr. Michel Kerszberg
Pasteur
Perturbation and Stability in Biological Systems[Aud][Cam]
2/14, 9:00 a.m. Dr. Garrett Odell
U. Wash.
Robust Segmentation[Aud][Cam]
2/13, 3:30 p.m. Dr. Joel Rothman
UCSB
Gene Regulatory Cascades and Dynamic Switches in C. elegans Development[Slides][Aud][Cam]
2/13, 2:00 p.m. Dr. Richard Mann
Columbia
Signals and Specificity in Fly Development[Aud][Cam]
2/13, 11:00 a.m. Dr. Alexander Schier
NYU
TBA[Aud][Cam]
2/13, 9:00 a.m. Dr. Matthew Freeman
Cambridge
Signalling Review[Slides][Aud][Cam]
2/12, 3:30 p.m. Discussion: Proliferation vs. Intercalation (Wolpert/Shraiman)[Aud][Cam]
2/12, 2:00 p.m. Discussion: Evolution (E. Davidson)[Aud][Cam]
2/12, 11:00 a.m. Dr. Michael Levine
Berkeley
Transcription Regulation in Complex Genetic Loci[Aud][Cam]
2/12, 9:00 a.m. Dr. William McGinnis
UCSD
Evolution of Transcription Factors[Slides][Aud][Cam]
2/11, 3:30 p.m. Dr. Bruce Baker
Stanford
From Genes to Morphology[Aud][Cam]
2/11, 2:00 p.m. Dr. John Reinitz
Stony Brook
Quantitative View of Embyonic Patterning[Aud][Cam]
2/11, 11:00 a.m. Dr. Claude Desplan
NYU
Multistep Process for Color Photoreceptor Differentiation[Slides][Aud][Cam]
2/11, 9:00 a.m. Dr. Eric Davidson
Caltech
Logic of Transcription Control[Slides][Aud][Cam]
2/10, 3:30 p.m. Dr. Aurelio Teleman
EMBL
Morphogen Gradients and Tissue Growth[Slides][Aud][Cam]
2/10, 2:00 p.m. Dr. Norbert Perrimon
Harvard
Wnt Morphogens[Aud][Cam]
2/10, 11:00 a.m. Dr. Eric Wieschaus
Princeton
Patterning and Morphogenesis[Aud][Cam]
2/10, 9:30 a.m. Dr. Lewis Wolpert
UCL
Problems in Development[Aud][Cam]

2/07, 2:00 p.m. Dr. Lewis Wolpert
UCL
Triumph of the Embryo II[Slides][Aud][Cam]
2/03, 10:00 a.m. Dr. Stuart Kauffman
Santa Fe Institute
Evidence for Biased Gene Regulation Rules & Implications for Global Dynamics of Genetic Regulatory Networks[Aud][Cam]
1/31, 10:00 a.m. Dr. J. Stavans
Weizmann
Regulation by DNA Structuring Protein in Bacteria[Aud]
1/29, 9:00 a.m. Dr. J. Little
(Arizona)
Dr. K. Sneppen
(NBI)
Do We Understand Lambda Phage?[Aud]

 Bacterial Regulation
1/24, 2:00 p.m. Dr. Ned Wingreen
NEC
How E. Coli Finds its Middle[Slides][Aud][Cam]
1/24, 11:00 a.m. Dr. Michael Savageau
University Michigan
Analysis of Alternative System Designs[Aud][Cam]
1/24, 9:00 a.m. Dr. Eduardo Groisman
Washington University
Combinatorial Control of Gene Expression by Two-Component Regulatory Systems[Aud][Cam]
1/23, 2:00 p.m. Dr. Konstantin Severinov
Rutgers
Transcription Regulation in Bacteriophage Development[Aud][Cam]
1/23, 11:00 a.m. Dr. David Low
UCSB
Orchestration of the Epigenetic Switch that Controls Reversible Pili Expression[Aud][Cam]
1/23, 9:00 a.m. Dr. Thomas Silhavy
Princeton
Pushing the Envelope: How E. Coli Senses External Stress[Aud][Cam]
1/22, 4:00 p.m. Dr. Richard Ebright
Rutgers
Transcription Elongation, Pausing, Arrest, and Termination: Structure and Mechanism[Slides][Aud][Cam]
1/22, 11:00 a.m. Dr. Sydney Kustu
Berkeley
From Nitrogen Metabolism in Enteric Bacteria to the Rhesus (Rh) Blood Group Substance of Humans: Wanderings of a Microbial Biologist[Slides][Aud][Cam]
1/22, 9:00 a.m. Dr. James Hoch
Scripps
Multi-Node Control and Recognition in Phosphorelay Signal Transduction[Aud][Cam]

 Modules and Evolvability
1/17, 9:00 a.m. Dr. Andrew Murray
Harvard
Evolving Yeast in the Laboratory[Aud][Cam]
1/16, 9:00 a.m. Dr. Adam Arkin
Berkeley
Practical Games with Bacteria and Viruses[Aud][Cam]
1/15, 11:00 a.m. Dr. Jonathan Weissman
UCSF
An Epigentic Switch: Prion Based Protein Regulation[Slides][Aud][Cam]
1/15, 9:00 a.m. Dr. Erin O'Shea
UCSF
Quantitative Studies of Signal Transduction[Slides][Aud][Cam]
1/14, 11:00 a.m. Dr. Marie-Anne Felix
Jussieu
Evolution of Development[Slides][Aud][Cam]
1/14, 9:00 a.m. Dr. Wen-Hsiung Li
Chicago
Duplication and Divergence[Slides][Aud][Cam]
1/13, 11:00 a.m. Dr. Naama Barkai
Weizmann
Modular Organization in the Yeast Transcription Network[Aud][Cam]
1/13, 9:00 a.m. Dr. Andrew Murray
Harvard
Modules and Evolution: A Review[Slides][Aud][Cam]

last modified 3/24/03 dme
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